Google Scholar Profile

Most of these papers can be found on ResearchGate

(undergraduate or *graduate student / postdoc work conducted in the McDaniel lab)

Holland-Moritz, H, J Stuart, *LR Lewis, S Miller, MC Mack, SF McDaniel, and N Fierer. Novel bacterial lineages associated with boreal moss species. submitted to Environmental Microbiology.

*Soares, LS, KA Bjorndal, AB Bolten, MAG dei Marcovaldi, PB Luz, R Machado, R Lo, SF McDaniel, AC Payton, TB Waltzek, and ML Wayne. Effects of hybridization on sea turtle fitness, submitted Conservation Genetics

Lang, D, K Ullrich, F Murat, J Fuchs, J Jenkins, F Haas, M Piednoel, H Gundlach, M Van Bel, R Meyberg, C Vives, J Morata, A Symeonidi, M Hiss, W Muchero, Y Kamisugi, O Saleh, G Blanc, E Decker, N van Gessel, J Grimwood, R Hayes, S Graham, L Gunter, SF McDaniel, S Hoernstein, A Larsson, F-W Li, P-F Perroud, J Philipps, P Ranjan, D Rokhsar, C Rothfels, L Schneider, S Shu, D Stevenson, F Thümmler, M Tillich, J-C Villarreal Aguilar, T Widiez, G Wong, A Wymore,Y Zhang, A  Zimmer, RS Quatrano, K Mayer, D Goodstein, J Casacuberta, K Vandepoele,R Reski, AC Cuming, G Tuskan, F Maumus, J Salse, J Schmutz, SA Rensing. The P. patens chromosome-scale assembly reveals moss genome structure and evolution. Plant Journal, in press.

*Hodel, RGJ, S Chen, AC Payton, SF McDaniel, PS Soltis, and DE Soltis. Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering. Scientific Reports, in press.

*Lewis, LR, EM Biersma, *SB Carey, K Holsinger, SF McDaniel, R Rozzi, B Goffinet. Bipolarity in Bryophytes and Lichens: A case study on the origin of the Magellanic sub-Antarctic endemic moss Tetraplodon fuegianus (Bryopsida: Splachnaceae). American Journal of Botany 104: 1651-1659.

*Storer, C, AC Payton, SF McDaniel, B Jordal, and J Hulcr. Cryptic genetic variation in an inbreeding and cosmopolitan pest, Xylosandrus crassiusculus,revealed using ddRADseq. Ecology and Evolution 7: 10974–10986

*Baughman, JT, AC Payton, AE Paasch, KM Fisher, and SF McDaniel. 2017. Multiple factors influence population sex ratios in the Mojave Desert moss Syntrichia caninervis. American Journal of Botany 104: 733-742

*Lewis, LRSM Ickert-Bond, EM Biersma, P Convey, B Goffinet, K Hassel, H Kruijer, C La Farge, J Metzgar, M Stech, JC Villarreal, and SF McDaniel. 2017. Future directions and priorities for Arctic bryophyte research. Arctic Science 3: 475-497

Désamoré, A, J Patiño, P Mardulyn, SF McDaniel, F Zanatta, B Laenen, and A Vanderpoorten. 2016. High migration rates shape the postglacial history of amphi-Atlantic bryophytes. Molecular Ecology 25: 5568-5584

McDaniel, SF, P-F Perroud, AC Cuming, and P Szövenyí. 2016. The Ceratodon purpureus transcriptome ushers in the era of moss comparative genomics, in Genomes and Evolution of Charophytes, Bryophytes, Lycophytes and Ferns ABR 78, Eds. SA Rensing and P-F Perroud. Elsevier Press, Oxford UK.

*Neubig, KM, OJ Blanchard, WM Whitten, and SF McDaniel. 2015. Molecular phylogenetics of Kosteletzkya (Malvaceae, Hibisceae) reveals multiple independent and successive polyploid speciation events. Botanical Journal of the Linnean Society 179: 421-435.

Magdy, M, O Werner, SF McDaniel, B Goffinet, RM Ros. 2015. A genomic scanning using AFLP to detect loci under selection in the moss Funaria hygrometrica along a climatic gradient in Sierra Nevada Mountains (Spain). Plant Biology 18: 280-288.

Carey, SB, AC. Payton, and SF McDaniel. 2015. A method for eliminating bacterial contamination from in vitro moss cultures. Applications in Plant Sciences. 3: 1400086.

Szövenyi, P, AC Cuming, RS Quatrano, P-F Perroud, SA Rensing, S Stevenson, K Symeonidi, and SF McDaniel. De novo assembly and comparative analysis of the Ceratodon purpureus transcriptome. Molecular Ecology Resources. DOI: 10.1111/1755-0998.12284

Laenen B, B Shaw, H Schneider, B GoffinetE Paradis, A Désamoré, J Heinrichs, JC Villarreal, SR Gradstein, SF McDaniel, DG Long, LL Forrest, ML Hollingsworth, B Crandall-Stotler, EC Davis, J Engel, M Von Konrat, ED Cooper, J Patiño, CJ Cox, A Vanderpoorten, and  AJ Shaw. 2014. Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts. Nature Communications 5: 5134

Norrell TE, KS Jones, AC Payton, and SF McDaniel. 2014. Meiotic sex ratio variation in natural populations of Ceratodon purpureus (Hedw.) Brid. American Journal of Botany. 101: 1572-1576.

Beike, AK, M von Stackelberg, M Schallenberg-Rüdinger, ST Hanke, M Follo, D Quandt, SF McDaniel, R Reski, BC Tan, and SA Rensing. 2014. Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex. BMC Evolutionary Biology 14: 158

Szövényi, P, N Devos, DJ Weston, X Yang, Z Hock, AJ Shaw, KK Shimizu, SF McDaniel, A Wagner. 2014. Efficient purging of deleterious mutations in plants with haploid selfing. Genome Biology and Evolution 6:1238-1252.

McDaniel, SF, *KM Neubig, AC Payton, RS Quatrano, and DJ Cove. 2013. Recent gene-capture on the UV sex chromosomes of the moss Ceratodon purpureusEvolution 67: 2811-2822

McDaniel, SF, MJ van Baren, KS Jones, AC Payton, and RS Quatrano. 2013. Estimating the nucleotide diversity in Ceratodon purpureus (Hedw.) Brid. from 208 conserved intron-spanning nuclear loci. Applications in Plant Sciences 1: 1200387 link

McDaniel, SF, J Atwood, and JG Burleigh. 2013. Recurrent evolution of dioecy in bryophytes. Evolution 67: 567-572

Stech, M, SF McDaniel, R Hernández-Maqueda RM Ros, O Werner, J Muñoz, and D Quandt. 2012. Phylogeny of haplolepideous mosses – challenges and perspectives. Journal of Bryology, 34: 173-186 link

McDaniel, SF, and P-F Perroud. 2012. Invited perspective: bryophytes as models for understanding the evolution of sexual systems. Bryologist 115: 1-11 link

Bachtrog, D, M Kirkpatrick, JE Mank, SF McDaniel, JC Pires, W Rice, and N Valenzuela. 2011. Are all sex chromosomes created equal? Trends in Genetics 27: 350-357 link

New Phytol cover

Perroud, P-F, DJ Cove, RS Quatrano, and SF McDaniel. 2011. An experimental method to facilitate the identification of hybrid sporophytes in the mossPhyscomitrella patens using fluorescent tagged lines. New Phytologist 191: 301-306 link

McDaniel, SF, M von Stackelberg, S. Richardt, R Reski, RS Quatrano and SA Rensing. 2010. The speciation history of the Physcomitrella – Physcomitrium complex, Evolution 64: 217-231 link

Hoang, QT, SH Cho, SF McDaniel, RS Quatrano, and JS Shin. 2009. An actinoporin plays a key role in drought tolerance in Physcomitrella patensNew Phytologist 184: 502-510 link

McDaniel, SF. 2009. The genetic basis of natural variation in bryophyte model systems, in The Moss Physcomitrella patens, eds. Knight, C, P-F Perroud, and DJ Cove. Blackwell Publishing, London. Annual Plant Reviews 36: 16-41

Cove, DJ, P-F Perroud, AJ Charron, SF McDaniel, A Khandelwal and RS Quatrano. 2009. The moss Physcomitrella patens: a novel model system for plant development and genomic studies, in Emerging Model Organisms, Cold Spring Harbor Laboratory Press, NY link

McDaniel, SF, JH Willis, and AJ Shaw. 2008. The genetic basis of abnormal development in interpopulation hybrids of the moss Ceratodon purpureusGenetics 179: 1425-1435 link

McDaniel, SF, JH Willis, and AJ Shaw. 2007. A linkage map reveals a complex basis for segregation distortion in an interpopulation cross in the moss Ceratodon purpureusGenetics 176: 2489-2500 link

Quatrano, RS, SF McDaniel, A Kandelwhal, P-F Perroud, and DJ Cove. 2007. Physcomitrella patens: mosses enter the genomics age. Current Opinion in Plant Biology 10: 1-8 link

Zartman, CE, SF McDaniel, and AJ Shaw. 2006. Experimental habitat fragmentation alters linkage disequilibrium but does not affect genetic diversity or population structure in the Amazonian liverwortRadula flaccidaMolecular Ecology 15: 2305-2315 link

AJB coverMcDaniel, SF. 2005. Genetic correlations do not constrain the evolution of sexual dimorphism in the moss Ceratodon purpureusEvolution 59: 2353-2361 link

McDaniel, SF and AJ Shaw. 2005. Selective sweeps and intercontinental migration in the cosmopolitan moss Ceratodon purpureus, (Hedw.) Brid. Molecular Ecology 14: 1121-1132 link

Miller, NG and SF McDaniel. 2004. Bryophyte dispersal capabilities inferred from colonization of an introduced substrate on Whiteface Mountain, New York.American Journal of Botany 91: 1173-1182 link


McDaniel, SF and AJ Shaw. 2003. Phylogeographic structure and cryptic speciation in the trans-Antarctic moss Pyrrhobryum mnioidesEvolution 57: 205-215 link

Shaw, AJ, SF McDaniel, O Werner, and RM Ros. 2002. New frontiers in bryology and lichenology: phylogeography and phylodemography. Bryologist 105: 373-383 link

McDaniel, SF and NG Miller. 2000. Winter dispersal of bryophyte fragments in the Adirondack Mountains, New York. Bryologist 103: 592-600 link